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Researchers typically follow a multi-step pipeline available on platforms like GitHub (stschiff/msmc) :
Tracking Human Population History: The Role of MSMC and MSMC2 1. Introduction Download MSMC Maps from Here (Click on this text)
: Convert raw genomic data into VCF and mask files. Combine Samples : Aggregate data from multiple individuals. Download MSMC Maps from Here (Click on this text)